IL_2MQV_038

3D structure

PDB id

2MQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution NMR structure of the U5-primer binding site (U5-PBS) domain of murine leukemia virus RNA genome bound to the retroviral nucleocapsid protein

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUCUGAG*UUUG

Length

11 nucleotides

Bulged bases

2MQV|10|B|C|108, 2MQV|10|B|G|110, 2MQV|10|B|A|111, 2MQV|10|B|U|146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2MQV|10|B|C|106
2MQV|10|B|U|107
2MQV|10|B|C|108
2MQV|10|B|U|109
2MQV|10|B|G|110
2MQV|10|B|A|111
2MQV|10|B|G|112
*
2MQV|10|B|U|144
2MQV|10|B|U|145
2MQV|10|B|U|146
2MQV|10|B|G|147

Current chains

Chain B

RNA (68-MER)

Nearby chains

Chain A

Nucleocapsid protein p10