IL_2MQV_047

3D structure

PDB id

2MQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution NMR structure of the U5-primer binding site (U5-PBS) domain of murine leukemia virus RNA genome bound to the retroviral nucleocapsid protein

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUAC*GGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2MQV_047 not in the Motif Atlas

Geometric match to IL_3PDR_004

Geometric discrepancy: 0.3056

The information below is about IL_3PDR_004

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

2MQV|9|B|C|120
2MQV|9|B|U|121
2MQV|9|B|A|122
2MQV|9|B|C|123
*
2MQV|9|B|G|134
2MQV|9|B|G|135
2MQV|9|B|G|136

Current chains

Chain B

RNA (68-MER)

Nearby chains