IL_2NBX_034

3D structure

PDB id

2NBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of the J-K region of EMCV IRES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

ACC*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2NBX_034 not in the Motif Atlas

Geometric match to IL_5TBW_079

Geometric discrepancy: 0.126

The information below is about IL_5TBW_079

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

2NBX|7|A|A|704
2NBX|7|A|C|705
2NBX|7|A|C|706
*
2NBX|7|A|G|718
2NBX|7|A|A|719
2NBX|7|A|U|720

Current chains

Chain A

IRES RNA (108-MER)

Nearby chains