IL_2NBX_039

3D structure

PDB id

2NBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of the J-K region of EMCV IRES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

ACC*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2NBX_039 not in the Motif Atlas

Geometric match to IL_6OL3_002

Geometric discrepancy: 0.1255

The information below is about IL_6OL3_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

2NBX|8|A|A|704
2NBX|8|A|C|705
2NBX|8|A|C|706
*
2NBX|8|A|G|718
2NBX|8|A|A|719
2NBX|8|A|U|720

Current chains

Chain A

IRES RNA (108-MER)

Nearby chains