IL_2NPY_001
3D structure
- PDB id
- 2NPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of a junctioned hairpin ribozyme incorporating 9atom linker and 2'-deoxy 2'-amino U at A-1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.65 Å
Loop
- Sequence
- C(2AU)GUCC*GAGAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 2AU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80926.1
- Basepair signature
- cWW-cWW-tSH-tHS-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
2NPY|1|A|C|4
2NPY|1|A|2AU|5
2NPY|1|A|G|6
2NPY|1|A|U|7
2NPY|1|A|C|8
2NPY|1|A|C|9
*
2NPY|1|B|G|6
2NPY|1|B|A|7
2NPY|1|B|G|8
2NPY|1|B|A|9
2NPY|1|B|A|10
2NPY|1|B|G|11
Current chains
- Chain A
- 5'-R(*UP*CP*CP*CP*(U2N)P*GP*UP*CP*CP*AP*CP*CP*G)-3'
- Chain B
- 5'-R(*CP*GP*GP*UP*GP*AP*GP*AP*AP*GP*GP*G)-3'
Nearby chains
- Chain C
- 5'-R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3'
- Chain D
- 5'-R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C)-3'
Coloring options: