IL_2NPY_002
3D structure
- PDB id
- 2NPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of a junctioned hairpin ribozyme incorporating 9atom linker and 2'-deoxy 2'-amino U at A-1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.65 Å
Loop
- Sequence
- GAGAAACAC*GGUACAUUACC
- Length
- 20 nucleotides
- Bulged bases
- 2NPY|1|D|C|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2NPY_002 not in the Motif Atlas
- Geometric match to IL_2P7E_001
- Geometric discrepancy: 0.0572
- The information below is about IL_2P7E_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60797.2
- Basepair signature
- cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
2NPY|1|C|G|19
2NPY|1|C|A|20
2NPY|1|C|G|21
2NPY|1|C|A|22
2NPY|1|C|A|23
2NPY|1|C|A|24
2NPY|1|C|C|25
2NPY|1|C|A|26
2NPY|1|C|C|27
*
2NPY|1|D|G|35
2NPY|1|D|G|36
2NPY|1|D|U|37
2NPY|1|D|A|38
2NPY|1|D|C|39
2NPY|1|D|A|40
2NPY|1|D|U|41
2NPY|1|D|U|42
2NPY|1|D|A|43
2NPY|1|D|C|44
2NPY|1|D|C|45
Current chains
- Chain C
- 5'-R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3'
- Chain D
- 5'-R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C)-3'
Nearby chains
- Chain A
- 5'-R(*UP*CP*CP*CP*(U2N)P*GP*UP*CP*CP*AP*CP*CP*G)-3'
- Chain B
- 5'-R(*CP*GP*GP*UP*GP*AP*GP*AP*AP*GP*GP*G)-3'
Coloring options: