IL_2O44_001

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_001 not in the Motif Atlas

Homologous match to IL_4WF9_001

Geometric discrepancy: 0.1105

The information below is about IL_4WF9_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_22311.2

Basepair signature

cWW-cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

11

Unit IDs

2O44|1|A|G|24
2O44|1|A|U|25
2O44|1|A|G|26
2O44|1|A|G|27
2O44|1|A|A|28
2O44|1|A|U|29
2O44|1|A|G|30
*
2O44|1|A|C|520
2O44|1|A|U|521
2O44|1|A|G|522
2O44|1|A|A|523
2O44|1|A|A|524
2O44|1|A|A|525
2O44|1|A|C|526

Current chains

Chain A

23S rRNA

Nearby chains