IL_2O44_027

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGUAG*CGAAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_027 not in the Motif Atlas

Homologous match to IL_7A0S_027

Geometric discrepancy: 0.4081

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

2O44|1|A|C|870
2O44|1|A|U|871
2O44|1|A|G|872
2O44|1|A|U|873
2O44|1|A|A|874
2O44|1|A|G|875
*
2O44|1|A|C|927
2O44|1|A|G|928
2O44|1|A|A|929
2O44|1|A|A|930
2O44|1|A|G|931
2O44|1|A|G|932

Current chains

Chain A

23S rRNA

Nearby chains