IL_2O44_037

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUCAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

2O44|1|A|C|1152, 2O44|1|A|A|1154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_037 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1887

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

2O44|1|A|C|1029
2O44|1|A|U|1030
2O44|1|A|C|1031
2O44|1|A|A|1032
2O44|1|A|G|1033
2O44|1|A|U|1034
2O44|1|A|G|1035
*
2O44|1|A|C|1150
2O44|1|A|U|1151
2O44|1|A|C|1152
2O44|1|A|A|1153
2O44|1|A|A|1154
2O44|1|A|G|1155

Current chains

Chain A

23S rRNA

Nearby chains