IL_2O44_041

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUU*AAGUG

Length

9 nucleotides

Bulged bases

2O44|1|A|G|1261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_041 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3521

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_37443.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

2O44|1|A|C|1210
2O44|1|A|G|1211
2O44|1|A|U|1212
2O44|1|A|U|1213
*
2O44|1|A|A|1259
2O44|1|A|A|1260
2O44|1|A|G|1261
2O44|1|A|U|1262
2O44|1|A|G|1263

Current chains

Chain A

23S rRNA

Nearby chains