IL_2O44_049

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_049 not in the Motif Atlas

Homologous match to IL_4WF9_051

Geometric discrepancy: 0.1302

The information below is about IL_4WF9_051

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

2O44|1|A|C|1364
2O44|1|A|U|1365
2O44|1|A|A|1366
2O44|1|A|A|1367
2O44|1|A|G|1368
*
2O44|1|A|C|1389
2O44|1|A|G|1390
2O44|1|A|A|1391
2O44|1|A|U|1392
2O44|1|A|G|1393

Current chains

Chain A

23S rRNA

Nearby chains