IL_2O44_051

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAU,AUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_051 not in the Motif Atlas

Homologous match to IL_4WF9_053

Geometric discrepancy: 0.2993

The information below is about IL_4WF9_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O44|1|A|C|1422
2O44|1|A|A|1423
2O44|1|A|U|1424
*
2O44|1|A|A|1607
2O44|1|A|U|1608
2O44|1|A|G|1609

Current chains

Chain A

23S rRNA

Nearby chains