IL_2O44_058

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUCG*CGGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_058 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2562

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

2O44|1|A|A|1499
2O44|1|A|U|1500
2O44|1|A|C|1501
2O44|1|A|G|1502
*
2O44|1|A|C|1518
2O44|1|A|G|1519
2O44|1|A|G|1520
2O44|1|A|U|1521

Current chains

Chain A

23S rRNA

Nearby chains