IL_2O44_061

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

2O44|1|A|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_061 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1471

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

2O44|1|A|C|1703
2O44|1|A|G|1704
2O44|1|A|U|1705
2O44|1|A|A|1706
2O44|1|A|A|1707
2O44|1|A|C|1708
*
2O44|1|A|G|1713
2O44|1|A|A|1714
2O44|1|A|A|1715
2O44|1|A|G|1716
2O44|1|A|A|1717
2O44|1|A|A|1718
2O44|1|A|G|1719

Current chains

Chain A

23S rRNA

Nearby chains