IL_2O44_068

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UG*UGAA

Length

6 nucleotides

Bulged bases

2O44|1|A|G|1882, 2O44|1|A|A|1883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_068 not in the Motif Atlas

Homologous match to IL_5J7L_315

Geometric discrepancy: 0.133

The information below is about IL_5J7L_315

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

2O44|1|A|U|1833
2O44|1|A|G|1834
*
2O44|1|A|U|1881
2O44|1|A|G|1882
2O44|1|A|A|1883
2O44|1|A|A|1884

Current chains

Chain A

23S rRNA

Nearby chains