IL_2O44_108

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

2O44|1|A|A|2745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_108 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.132

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

2O44|1|A|G|2717
2O44|1|A|A|2718
2O44|1|A|U|2719
2O44|1|A|A|2720
2O44|1|A|A|2721
2O44|1|A|C|2722
*
2O44|1|A|G|2742
2O44|1|A|G|2743
2O44|1|A|A|2744
2O44|1|A|A|2745
2O44|1|A|G|2746
2O44|1|A|C|2747

Current chains

Chain A

23S rRNA

Nearby chains