IL_2O44_114

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUUAAG*CGAAAAUGAUCGGGGC

Length

23 nucleotides

Bulged bases

2O44|1|A|U|1037, 2O44|1|A|A|1138, 2O44|1|A|U|1141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_114 not in the Motif Atlas

Geometric match to IL_7A0S_037

Geometric discrepancy: 0.1265

The information below is about IL_7A0S_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.4

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

2O44|1|A|G|1035
2O44|1|A|G|1036
2O44|1|A|U|1037
2O44|1|A|U|1038
2O44|1|A|A|1039
2O44|1|A|A|1040
2O44|1|A|G|1041
*
2O44|1|A|C|1135
2O44|1|A|G|1136
2O44|1|A|A|1137
2O44|1|A|A|1138
2O44|1|A|A|1139
2O44|1|A|A|1140
2O44|1|A|U|1141
2O44|1|A|G|1142
2O44|1|A|A|1143
2O44|1|A|U|1144
2O44|1|A|C|1145
2O44|1|A|G|1146
2O44|1|A|G|1147
2O44|1|A|G|1148
2O44|1|A|G|1149
2O44|1|A|C|1150

Current chains

Chain A

23S rRNA

Nearby chains