IL_2O44_121

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUCGCAUAGACAGCC*GGUCGAGUGAC

Length

26 nucleotides

Bulged bases

2O44|1|A|A|1055, 2O44|1|A|U|1056, 2O44|1|A|A|1057, 2O44|1|A|A|1122

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O44|1|A|G|1050
2O44|1|A|U|1051
2O44|1|A|C|1052
2O44|1|A|G|1053
2O44|1|A|C|1054
2O44|1|A|A|1055
2O44|1|A|U|1056
2O44|1|A|A|1057
2O44|1|A|G|1058
2O44|1|A|A|1059
2O44|1|A|C|1060
2O44|1|A|A|1061
2O44|1|A|G|1062
2O44|1|A|C|1063
2O44|1|A|C|1064
*
2O44|1|A|G|1117
2O44|1|A|G|1118
2O44|1|A|U|1119
2O44|1|A|C|1120
2O44|1|A|G|1121
2O44|1|A|A|1122
2O44|1|A|G|1123
2O44|1|A|U|1124
2O44|1|A|G|1125
2O44|1|A|A|1126
2O44|1|A|C|1127

Current chains

Chain A

23S rRNA

Nearby chains