IL_2O44_123

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGAGG*CGCAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_123 not in the Motif Atlas

Geometric match to IL_8ZA4_001

Geometric discrepancy: 0.2734

The information below is about IL_8ZA4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

2O44|1|A|G|1369
2O44|1|A|U|1370
2O44|1|A|G|1371
2O44|1|A|A|1372
2O44|1|A|G|1373
2O44|1|A|G|1374
*
2O44|1|A|C|1383
2O44|1|A|G|1384
2O44|1|A|C|1385
2O44|1|A|A|1386
2O44|1|A|G|1387
2O44|1|A|C|1388

Current chains

Chain A

23S rRNA

Nearby chains