IL_2O44_142

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_142 not in the Motif Atlas

Homologous match to IL_9DFE_028

Geometric discrepancy: 0.2106

The information below is about IL_9DFE_028

Detailed Annotation

C-loop with bulged stacked A's

Broad Annotation

C-loop

Motif group

IL_16301.2

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

10

Unit IDs

2O44|1|A|G|877
2O44|1|A|C|878
2O44|1|A|A|879
2O44|1|A|C|880
2O44|1|A|U|881
*
2O44|1|A|A|921
2O44|1|A|A|922
2O44|1|A|A|923
2O44|1|A|C|924

Current chains

Chain A

23S rRNA

Nearby chains