IL_2O44_146

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAUGG*UCUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_146 not in the Motif Atlas

Homologous match to IL_7A0S_108

Geometric discrepancy: 0.5366

The information below is about IL_7A0S_108

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

2O44|1|A|U|1431
2O44|1|A|G|1432
2O44|1|A|A|1433
2O44|1|A|U|1434
2O44|1|A|G|1435
2O44|1|A|G|1436
*
2O44|1|A|U|1592
2O44|1|A|C|1593
2O44|1|A|U|1594
2O44|1|A|A|1595
2O44|1|A|A|1596
2O44|1|A|A|1597

Current chains

Chain A

23S rRNA

Nearby chains