IL_2O45_011

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O45_011 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.242

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

2O45|1|A|G|215
2O45|1|A|U|216
2O45|1|A|U|217
2O45|1|A|A|218
2O45|1|A|G|219
2O45|1|A|U|220
2O45|1|A|A|221
2O45|1|A|G|222
*
2O45|1|A|C|230
2O45|1|A|G|231
2O45|1|A|A|232
2O45|1|A|A|233
2O45|1|A|C|234
2O45|1|A|C|235
2O45|1|A|C|236

Current chains

Chain A

23S rRNA

Nearby chains