IL_2O45_024

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGUG*CUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O45_024 not in the Motif Atlas

Geometric match to IL_4V9F_028

Geometric discrepancy: 0.2004

The information below is about IL_4V9F_028

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

2O45|1|A|G|751
2O45|1|A|G|752
2O45|1|A|U|753
2O45|1|A|G|754
*
2O45|1|A|C|769
2O45|1|A|U|770
2O45|1|A|C|771

Current chains

Chain A

23S rRNA

Nearby chains