IL_2O45_041

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUCAGUGGUUAAG*CGAAAAUGAUCGGGGCUCAAG

Length

34 nucleotides

Bulged bases

2O45|1|A|G|1036, 2O45|1|A|U|1037, 2O45|1|A|A|1138, 2O45|1|A|A|1139, 2O45|1|A|A|1140, 2O45|1|A|U|1141, 2O45|1|A|C|1152

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O45|1|A|C|1029
2O45|1|A|U|1030
2O45|1|A|C|1031
2O45|1|A|A|1032
2O45|1|A|G|1033
2O45|1|A|U|1034
2O45|1|A|G|1035
2O45|1|A|G|1036
2O45|1|A|U|1037
2O45|1|A|U|1038
2O45|1|A|A|1039
2O45|1|A|A|1040
2O45|1|A|G|1041
*
2O45|1|A|C|1135
2O45|1|A|G|1136
2O45|1|A|A|1137
2O45|1|A|A|1138
2O45|1|A|A|1139
2O45|1|A|A|1140
2O45|1|A|U|1141
2O45|1|A|G|1142
2O45|1|A|A|1143
2O45|1|A|U|1144
2O45|1|A|C|1145
2O45|1|A|G|1146
2O45|1|A|G|1147
2O45|1|A|G|1148
2O45|1|A|G|1149
2O45|1|A|C|1150
2O45|1|A|U|1151
2O45|1|A|C|1152
2O45|1|A|A|1153
2O45|1|A|A|1154
2O45|1|A|G|1155

Current chains

Chain A

23S rRNA

Nearby chains