IL_2O45_054

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O45_054 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.1155

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

2O45|1|A|A|1275
2O45|1|A|U|1276
2O45|1|A|G|1277
2O45|1|A|A|1278
2O45|1|A|G|1279
2O45|1|A|U|1280
2O45|1|A|A|1281
2O45|1|A|A|1282
*
2O45|1|A|U|1994
2O45|1|A|G|1995
2O45|1|A|A|1996
2O45|1|A|A|1997
2O45|1|A|A|1998
2O45|1|A|U|1999
2O45|1|A|U|2000

Current chains

Chain A

23S rRNA

Nearby chains