IL_2O45_059

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O45_059 not in the Motif Atlas

Homologous match to IL_7A0S_048

Geometric discrepancy: 0.1593

The information below is about IL_7A0S_048

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

2O45|1|A|C|1364
2O45|1|A|U|1365
2O45|1|A|A|1366
2O45|1|A|A|1367
2O45|1|A|G|1368
*
2O45|1|A|C|1389
2O45|1|A|G|1390
2O45|1|A|A|1391
2O45|1|A|U|1392
2O45|1|A|G|1393

Current chains

Chain A

23S rRNA

Nearby chains