IL_2O45_071

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGCCAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

2O45|1|A|C|1792, 2O45|1|A|C|1808, 2O45|1|A|U|1812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O45_071 not in the Motif Atlas

Homologous match to IL_4WF9_069

Geometric discrepancy: 0.4991

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

2O45|1|A|U|1789
2O45|1|A|G|1790
2O45|1|A|C|1791
2O45|1|A|C|1792
2O45|1|A|A|1793
2O45|1|A|A|1794
2O45|1|A|C|1795
*
2O45|1|A|G|1805
2O45|1|A|G|1806
2O45|1|A|A|1807
2O45|1|A|C|1808
2O45|1|A|G|1809
2O45|1|A|U|1810
2O45|1|A|A|1811
2O45|1|A|U|1812
2O45|1|A|A|1813

Current chains

Chain A

23S rRNA

Nearby chains