IL_2O45_078

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

2O45|1|A|A|1921, 2O45|1|A|U|1926, 2O45|1|A|U|1927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O45|1|A|C|1917
2O45|1|A|G|1918
2O45|1|A|A|1919
2O45|1|A|A|1920
2O45|1|A|A|1921
2O45|1|A|U|1922
2O45|1|A|U|1923
2O45|1|A|C|1924
2O45|1|A|C|1925
2O45|1|A|U|1926
2O45|1|A|U|1927
2O45|1|A|G|1928
*
2O45|1|A|C|1944
2O45|1|A|C|1945
2O45|1|A|U|1946
2O45|1|A|G|1947

Current chains

Chain A

23S rRNA

Nearby chains