IL_2O45_101

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

2O45|1|A|A|2551, 2O45|1|A|C|2552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O45_101 not in the Motif Atlas

Geometric match to IL_7A0S_090

Geometric discrepancy: 0.2216

The information below is about IL_7A0S_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.3

Basepair signature

cWW-cWW

Number of instances in this motif group

26

Unit IDs

2O45|1|A|C|2491
2O45|1|A|G|2492
*
2O45|1|A|C|2550
2O45|1|A|A|2551
2O45|1|A|C|2552
2O45|1|A|G|2553

Current chains

Chain A

23S rRNA

Nearby chains