IL_2O45_108

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCGCU*AUG

Length

8 nucleotides

Bulged bases

2O45|1|A|U|2706

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O45_108 not in the Motif Atlas

Homologous match to IL_4WF9_101

Geometric discrepancy: 0.2205

The information below is about IL_4WF9_101

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.13

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

23

Unit IDs

2O45|1|A|C|2659
2O45|1|A|C|2660
2O45|1|A|G|2661
2O45|1|A|C|2662
2O45|1|A|U|2663
*
2O45|1|A|A|2705
2O45|1|A|U|2706
2O45|1|A|G|2707

Current chains

Chain A

23S rRNA

Nearby chains