IL_2O45_129

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGCGAUCG*CGGUCACAUGC

Length

19 nucleotides

Bulged bases

2O45|1|A|C|1497, 2O45|1|A|G|1498, 2O45|1|A|U|1521, 2O45|1|A|A|1523, 2O45|1|A|C|1524, 2O45|1|A|A|1525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O45|1|A|G|1495
2O45|1|A|G|1496
2O45|1|A|C|1497
2O45|1|A|G|1498
2O45|1|A|A|1499
2O45|1|A|U|1500
2O45|1|A|C|1501
2O45|1|A|G|1502
*
2O45|1|A|C|1518
2O45|1|A|G|1519
2O45|1|A|G|1520
2O45|1|A|U|1521
2O45|1|A|C|1522
2O45|1|A|A|1523
2O45|1|A|C|1524
2O45|1|A|A|1525
2O45|1|A|U|1526
2O45|1|A|G|1527
2O45|1|A|C|1528

Current chains

Chain A

23S rRNA

Nearby chains