IL_2O45_135

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AUAGU*GCGGGU

Length

11 nucleotides

Bulged bases

2O45|1|A|G|2217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O45_135 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.3202

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

2O45|1|A|A|2063
2O45|1|A|U|2064
2O45|1|A|A|2065
2O45|1|A|G|2066
2O45|1|A|U|2067
*
2O45|1|A|G|2214
2O45|1|A|C|2215
2O45|1|A|G|2216
2O45|1|A|G|2217
2O45|1|A|G|2218
2O45|1|A|U|2219

Current chains

Chain A

23S rRNA

Nearby chains