IL_2O45_137

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCGAG*CGAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O45_137 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.3581

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

2O45|1|A|G|2328
2O45|1|A|C|2329
2O45|1|A|G|2330
2O45|1|A|A|2331
2O45|1|A|G|2332
*
2O45|1|A|C|2343
2O45|1|A|G|2344
2O45|1|A|A|2345
2O45|1|A|G|2346
2O45|1|A|C|2347

Current chains

Chain A

23S rRNA

Nearby chains