IL_2OIJ_004

3D structure

PDB id

2OIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

HIV-1 subtype B DIS RNA extended duplex AuCl3 soaked

Experimental method

X-RAY DIFFRACTION

Resolution

2.31 Å

Loop

Sequence

CACG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OIJ_004 not in the Motif Atlas

Geometric match to IL_2O3Y_002

Geometric discrepancy: 0.3003

The information below is about IL_2O3Y_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_50858.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

2OIJ|1|A|C|15
2OIJ|1|A|A|16
2OIJ|1|A|C|17
2OIJ|1|A|G|18
*
2OIJ|1|B|U|6
2OIJ|1|B|G|7
2OIJ|1|B|A|8
2OIJ|1|B|A|9
2OIJ|1|B|G|10

Current chains

Chain A

5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'

Chain B

5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'

Nearby chains