IL_2OTJ_006
3D structure
- PDB id
- 2OTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 13-deoxytedanolide bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAACUG*CUCAGUAU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2OTJ_006 not in the Motif Atlas
- Geometric match to IL_4V9F_006
- Geometric discrepancy: 0.0286
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
2OTJ|1|0|A|158
2OTJ|1|0|G|159
2OTJ|1|0|A|160
2OTJ|1|0|A|161
2OTJ|1|0|C|162
2OTJ|1|0|U|163
2OTJ|1|0|G|164
*
2OTJ|1|0|C|171
2OTJ|1|0|U|172
2OTJ|1|0|C|173
2OTJ|1|0|A|174
2OTJ|1|0|G|175
2OTJ|1|0|U|176
2OTJ|1|0|A|177
2OTJ|1|0|U|178
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain 3
- 50S ribosomal protein L44E
- Chain C
- 50S ribosomal protein L4P
- Chain L
- 50S ribosomal protein L15P
- Chain M
- 50S ribosomal protein L15e
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