IL_2OTJ_007
3D structure
- PDB id
- 2OTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 13-deoxytedanolide bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UUAGUAA*UGAACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2OTJ_007 not in the Motif Atlas
- Homologous match to IL_4V9F_007
- Geometric discrepancy: 0.0395
- The information below is about IL_4V9F_007
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
2OTJ|1|0|U|210
2OTJ|1|0|U|211
2OTJ|1|0|A|212
2OTJ|1|0|G|213
2OTJ|1|0|U|214
2OTJ|1|0|A|215
2OTJ|1|0|A|216
*
2OTJ|1|0|U|224
2OTJ|1|0|G|225
2OTJ|1|0|A|226
2OTJ|1|0|A|227
2OTJ|1|0|C|228
2OTJ|1|0|G|229
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L44E
- Chain L
- 50S ribosomal protein L15P
- Chain M
- 50S ribosomal protein L15e
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