IL_2OTJ_011
3D structure
- PDB id
- 2OTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 13-deoxytedanolide bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUCUCAUC*GUGCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2OTJ_011 not in the Motif Atlas
- Homologous match to IL_4V9F_011
- Geometric discrepancy: 0.4379
- The information below is about IL_4V9F_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22028.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
2OTJ|1|0|C|280
2OTJ|1|0|U|281
2OTJ|1|0|C|282
2OTJ|1|0|U|283
2OTJ|1|0|C|284
2OTJ|1|0|A|285
2OTJ|1|0|U|286
2OTJ|1|0|C|287
*
2OTJ|1|0|G|365
2OTJ|1|0|U|366
2OTJ|1|0|G|367
2OTJ|1|0|C|368
2OTJ|1|0|G|369
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L15e
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