IL_2OTJ_025
3D structure
- PDB id
- 2OTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 13-deoxytedanolide bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAUC*GCAACAGC
- Length
- 13 nucleotides
- Bulged bases
- 2OTJ|1|0|A|894, 2OTJ|1|0|G|898
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2OTJ_025 not in the Motif Atlas
- Geometric match to IL_4V9F_024
- Geometric discrepancy: 0.0469
- The information below is about IL_4V9F_024
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
2OTJ|1|0|G|765
2OTJ|1|0|A|766
2OTJ|1|0|A|767
2OTJ|1|0|U|768
2OTJ|1|0|C|769
*
2OTJ|1|0|G|892
2OTJ|1|0|C|893
2OTJ|1|0|A|894
2OTJ|1|0|A|895
2OTJ|1|0|C|896
2OTJ|1|0|A|897
2OTJ|1|0|G|898
2OTJ|1|0|C|899
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain C
- 50S ribosomal protein L4P
- Chain L
- 50S ribosomal protein L15P
- Chain M
- 50S ribosomal protein L15e
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