IL_2OTJ_046

3D structure

PDB id

2OTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGC*GACG

Length

7 nucleotides

Bulged bases

2OTJ|1|0|A|1352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OTJ_046 not in the Motif Atlas

Homologous match to IL_4V9F_046

Geometric discrepancy: 0.042

The information below is about IL_4V9F_046

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

2OTJ|1|0|C|1301
2OTJ|1|0|G|1302
2OTJ|1|0|C|1303
*
2OTJ|1|0|G|1351
2OTJ|1|0|A|1352
2OTJ|1|0|C|1353
2OTJ|1|0|G|1354

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain L

50S ribosomal protein L15P

Chain Y

50S ribosomal protein L32e