IL_2OTJ_052

3D structure

PDB id

2OTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAAG*CGAAAUG

Length

12 nucleotides

Bulged bases

2OTJ|1|0|A|1486

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OTJ_052 not in the Motif Atlas

Homologous match to IL_4V9F_052

Geometric discrepancy: 0.0353

The information below is about IL_4V9F_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_10133.1

Basepair signature

cWW-L-R-tHW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

2OTJ|1|0|C|1456
2OTJ|1|0|U|1457
2OTJ|1|0|A|1458
2OTJ|1|0|A|1459
2OTJ|1|0|G|1460
*
2OTJ|1|0|C|1483
2OTJ|1|0|G|1484
2OTJ|1|0|A|1485
2OTJ|1|0|A|1486
2OTJ|1|0|A|1487
2OTJ|1|0|U|1488
2OTJ|1|0|G|1489

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain 2

50S ribosomal protein L39e

Chain A

50S ribosomal protein L2P