IL_2OTJ_056

3D structure

PDB id

2OTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAC*GCAUAG

Length

11 nucleotides

Bulged bases

2OTJ|1|0|U|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OTJ_056 not in the Motif Atlas

Homologous match to IL_4V9F_056

Geometric discrepancy: 0.0743

The information below is about IL_4V9F_056

Detailed Annotation

tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_62654.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

2OTJ|1|0|C|1570
2OTJ|1|0|G|1571
2OTJ|1|0|A|1572
2OTJ|1|0|A|1573
2OTJ|1|0|C|1574
*
2OTJ|1|0|G|1622
2OTJ|1|0|C|1623
2OTJ|1|0|A|1624
2OTJ|1|0|U|1625
2OTJ|1|0|A|1626
2OTJ|1|0|G|1627

Current chains

Chain 0

23S ribosomal RNA

Nearby chains