IL_2OTJ_082

3D structure

PDB id

2OTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUC*GGCUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OTJ_082 not in the Motif Atlas

Geometric match to IL_4V9F_084

Geometric discrepancy: 0.0874

The information below is about IL_4V9F_084

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

2OTJ|1|0|G|2494
2OTJ|1|0|U|2495
2OTJ|1|0|C|2496
*
2OTJ|1|0|G|2524
2OTJ|1|0|G|2525
2OTJ|1|0|C|2526
2OTJ|1|0|U|2527
2OTJ|1|0|U|2528

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L10e