IL_2OTJ_109

3D structure

PDB id

2OTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUGA*UACCC

Length

10 nucleotides

Bulged bases

2OTJ|1|0|G|1165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OTJ_109 not in the Motif Atlas

Geometric match to IL_5J7L_384

Geometric discrepancy: 0.2502

The information below is about IL_5J7L_384

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33835.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

2OTJ|1|0|G|1162
2OTJ|1|0|G|1163
2OTJ|1|0|U|1164
2OTJ|1|0|G|1165
2OTJ|1|0|A|1166
*
2OTJ|1|0|U|1180
2OTJ|1|0|A|1181
2OTJ|1|0|C|1182
2OTJ|1|0|C|1183
2OTJ|1|0|C|1184

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L11P