IL_2OTL_032

3D structure

PDB id

2OTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Girodazole bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCGAGG*CCGUUUGACG

Length

16 nucleotides

Bulged bases

2OTL|1|0|U|1029, 2OTL|1|0|U|1030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OTL|1|0|C|936
2OTL|1|0|C|937
2OTL|1|0|G|938
2OTL|1|0|A|939
2OTL|1|0|G|940
2OTL|1|0|G|941
*
2OTL|1|0|C|1025
2OTL|1|0|C|1026
2OTL|1|0|G|1027
2OTL|1|0|U|1028
2OTL|1|0|U|1029
2OTL|1|0|U|1030
2OTL|1|0|G|1031
2OTL|1|0|A|1032
2OTL|1|0|C|1033
2OTL|1|0|G|1034

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L18e

Chain Q

50S ribosomal protein L21e

Chain W

50S ribosomal protein L30P