IL_2PXD_001

3D structure

PDB id

2PXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Variant 1 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle

Experimental method

X-RAY DIFFRACTION

Resolution

2 Å

Loop

Sequence

UACCAG*CAA

Length

9 nucleotides

Bulged bases

2PXD|1|B|A|143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2PXD_001 not in the Motif Atlas

Geometric match to IL_3LQX_001

Geometric discrepancy: 0.15

The information below is about IL_3LQX_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59302.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

2PXD|1|B|U|139
2PXD|1|B|A|140
2PXD|1|B|C|141
2PXD|1|B|C|142
2PXD|1|B|A|143
2PXD|1|B|G|144
*
2PXD|1|B|C|167
2PXD|1|B|A|168
2PXD|1|B|A|169

Current chains

Chain B

4.5 S RNA

Nearby chains

Chain A

Signal recognition particle protein