IL_2PXD_002
3D structure
- PDB id
- 2PXD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Variant 1 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2 Å
Loop
- Sequence
- UCAGGU*AAGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2PXD_002 not in the Motif Atlas
- Geometric match to IL_3LQX_002
- Geometric discrepancy: 0.0766
- The information below is about IL_3LQX_002
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_35186.2
- Basepair signature
- cWW-tSH-tHW-L-R-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
2PXD|1|B|U|146
2PXD|1|B|C|147
2PXD|1|B|A|148
2PXD|1|B|G|149
2PXD|1|B|G|150
2PXD|1|B|U|151
*
2PXD|1|B|A|160
2PXD|1|B|A|161
2PXD|1|B|G|162
2PXD|1|B|C|163
2PXD|1|B|A|164
2PXD|1|B|G|165
Current chains
- Chain B
- 4.5 S RNA
Nearby chains
- Chain A
- Signal recognition particle protein
Coloring options: