IL_2PXV_002

3D structure

PDB id

2PXV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Variant 6 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle

Experimental method

X-RAY DIFFRACTION

Resolution

2 Å

Loop

Sequence

UCAGGU*AAGCAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59702.1

Basepair signature

cWW-tSH-tWH-tHW-tHS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

2PXV|1|B|U|146
2PXV|1|B|C|147
2PXV|1|B|A|148
2PXV|1|B|G|149
2PXV|1|B|G|150
2PXV|1|B|U|151
*
2PXV|1|B|A|160
2PXV|1|B|A|161
2PXV|1|B|G|162
2PXV|1|B|C|163
2PXV|1|B|A|164
2PXV|1|B|G|165

Current chains

Chain B

4.5 S RNA

Nearby chains

Chain A

Signal recognition particle protein