IL_2Q1R_002

3D structure

PDB id

2Q1R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Analysis of the RNA Dodecamer CGCGAAUUAGCG, with a G-A mismatch.

Experimental method

X-RAY DIFFRACTION

Resolution

1.12 Å

Loop

Sequence

UAG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01312.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

285

Unit IDs

2Q1R|1|A|U|1008
2Q1R|1|A|A|1009
2Q1R|1|A|G|1010
*
2Q1R|1|A|C|1003||||2_755
2Q1R|1|A|G|1004||||2_755
2Q1R|1|A|A|1005||||2_755

Current chains

Chain A

RNA (5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*AP*GP*CP*G)-3')

Nearby chains