IL_2QA4_002

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGC*GACC

Length

7 nucleotides

Bulged bases

2QA4|1|0|A|449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QA4_002 not in the Motif Atlas

Geometric match to IL_4E48_001

Geometric discrepancy: 0.2345

The information below is about IL_4E48_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

2QA4|1|0|G|32
2QA4|1|0|G|33
2QA4|1|0|C|34
*
2QA4|1|0|G|448
2QA4|1|0|A|449
2QA4|1|0|C|450
2QA4|1|0|C|451

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain T

50S ribosomal protein L24P