IL_2QA4_028

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAG*UGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QA4_028 not in the Motif Atlas

Homologous match to IL_4V9F_027

Geometric discrepancy: 0.0822

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

2QA4|1|0|U|794
2QA4|1|0|G|795
2QA4|1|0|A|796
2QA4|1|0|A|797
2QA4|1|0|G|798
*
2QA4|1|0|U|815
2QA4|1|0|G|816
2QA4|1|0|G|817
2QA4|1|0|A|818
2QA4|1|0|A|819

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain P

50S ribosomal protein L19e

Chain Z

50S ribosomal protein L37Ae